CRISPR Screen Dataset
Soriaga LB (2025) - 8-PMID40372436
Title: Shared host genetic landscape of respiratory viral infection.
Screen Details:
- Screen Rationale : Increased/decreased resistance to virus
- Cell Type : Lung Squamous Cell Carcinoma Cell Line [BTO:0002202, EFO:0000708]
- Cell Line : SK-MES-1 [BTO:0002203, CELLOSAURUS:CVCL_0630]
- Phenotype : Response To Virus
- Condition : Virus: HCoV-229E (Human coronavirus 229E) (0.02 MOI) [NCBI Taxid 11137]
- Library : Brunello (human) [AddGene] | Type: CRISPRn | Format: Pool | Enzyme: Cas9 | Methodology: Knockout
- Analysis Method : MaGeCK | Number of Hits: 452 | Full Dataset Size: 20,193
- Experimental Setup : Virus Exposure | Duration: 72 Hours
- Significance : Authors have indicated that results with Score.2 (FDR) < 0.05 OR Score.4 (FDR) < 0.05 are to be considered significant. These results are indicated by '' in the HIT column of the table below.
Notes:
- Genes with a significant positive score are enriched in a population exposed to the virus suggesting KO of the gene results in increased survival and the gene normally play a pro-viral role
- Genes with a significant negative score are depleted in a population exposed to the virus suggesting KO of the gene results in decreased survival and the gene normally play an anti-viral role
Score Distribution
< 1
> 6.5696e-20