Related Resources
The Biological General Repository for Interaction Datasets (BioGRID) is an interaction, post-translational modification, and chemical association repository with data compiled through comprehensive curation efforts
CRISPR Screen data in BioGRID ORCS can be accessed via the BioGRID ORCS REST web service. Screens in various formats can be fetched from the BioGRID ORCS REST Service over HTTPS, programmatically or in a browser.
BioGRID themed curation projects focus on specific biological processes with disease relevance. Core genes/proteins central to the process are assembled with expert input and relevant publications curated for biological interactions. Themed curation projects are updated monthly and additional projects are generated on a regular basis.
Latest News
The BioGRID's curated set of data have been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 77,841 publications. These additions bring our total number of non-redundant interactions to 1,684,710, raw interactions to 2,133,831, non-redundant chemical associations to 13,057, raw chemical associations to 29,417, Non-Redundant PTM Sites to 563,757 and Un-Assigned PTMs to 57,396.
New curated data are added in curation updates on a monthly basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these data, visit our download page or utilize our web service.
The BioGRID's curated set of data have been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 77,603 publications. These additions bring our total number of non-redundant interactions to 1,679,607, raw interactions to 2,127,726, non-redundant chemical associations to 13,057, raw chemical associations to 29,417, Non-Redundant PTM Sites to 563,757 and Un-Assigned PTMs to 57,396.
New curated data are added in curation updates on a monthly basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these data, visit our download page or utilize our web service.
The BioGRID ORCS curated CRISPR database has been updated to include CRISPR screens from a total of 215 different publications. These additions bring the total number of curated CRISPR screens in our database to 1,422 encompassing 85,000+ genes, 719 different cell lines, 119 different cell types, and 19 different phenotypes across 4 different organisms (Human, Mouse, African Green Monkey, and Fruit Fly). Additionally, we've curated 46 coronavirus-related screens including 24 specifically for SARS-CoV-2 (COVID-19).
New curated data are added to our CRISPR Database in curation updates on a regular basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these CRISPR data, visit our download page or utilize our web service.
The BioGRID's curated set of data have been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 77,459 publications. These additions bring our total number of non-redundant interactions to 1,677,595, raw interactions to 2,124,752, non-redundant chemical associations to 13,057, raw chemical associations to 29,417, Non-Redundant PTM Sites to 563,757 and Un-Assigned PTMs to 57,396.
New curated data are added in curation updates on a monthly basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these data, visit our download page or utilize our web service.
The BioGRID's curated set of data have been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 76,903 publications. These additions bring our total number of non-redundant interactions to 1,627,824, raw interactions to 2,067,167, non-redundant chemical associations to 13,057, raw chemical associations to 29,417, Non-Redundant PTM Sites to 558,113 and Un-Assigned PTMs to 57,396.
New curated data are added in curation updates on a monthly basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these data, visit our download page or utilize our web service.
BioGRID themed curation projects focus on specific biological processes with disease relevance. Core genes/proteins central to the process are assembled with expert input and relevant publications curated for biological interactions. All BioGRID Themed curation projects are updated monthly and the following is a listing of our current themed curation projects, and their statistics as of this update:
| Project | Proteins | Publications | Interactions | Chemical Interactions |
PTMs |
|---|---|---|---|---|---|
| COVID-19 Coronavirus | 110 | 330 | 22,324 | - | 156 |
| Ubiquitin-Proteasome System | 1,586 | 20,039 | 280,264 | 1,540 | 61,432 |
| Fanconi Anemia | 69 | 3,146 | 18,425 | 94 | 4,452 |
| Glioblastoma | 198 | 6,187 | 31,796 | 852 | 8,418 |
| Autophagy | 197 | 3,715 | 28,305 | 303 | 7,355 |
| Saccharomyces cerevisiae Kinome | 260 | 5,117 | 99,678 | - | 3,853 |
To view all BioGRID Themed Curation Projects, visit our project page. For more information on BioGRID curation of themed projects or if you're interested in contributing to a new or existing project, please contact us at biogridadmin@gmail.com.
The BioGRID's curated set of data have been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 76,687 publications. These additions bring our total number of non-redundant interactions to 1,611,895, raw interactions to 2,045,743, non-redundant chemical associations to 12,815, raw chemical associations to 29,093, Non-Redundant PTM Sites to 553,360 and Un-Assigned PTMs to 57,396.
New curated data are added in curation updates on a monthly basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these data, visit our download page or utilize our web service.
Our latest BioGRID ORCS CRISPR Database update adds a new screen from the study, "A comprehensive phenotypic CRISPR-Cas9 screen of the ubiquitin pathway uncovers roles of ubiquitin ligases in mitosis" by Hundley FV et al. (Molecular Cell, 2021). In this study, chemical-genetic CRISPR screens were carried out to identify human Ubiquitin-Proteasome System (UPS) genes, including 629 E3 ligases and 56 DUBs, whose knockout led to increased or decreased resistance to specific compounds. These compounds targeted various biological processes, including proteostasis, cell signaling and metabolism, thereby indicating potential roles of the UPS hit genes in diverse cellular processes.
A special thanks to the authors Hundley FV, Sanvisens Delgado N, Marin HC, Carr KL, Tian R, and Toczyski DP and the Department of Biochemistry and Biophysics at the University of California San Francisco.
If you have a CRISPR Screen Dataset you'd like to deposit directly into the BioGRID ORCS CRISPR Database, please contact us at biogridadmin@gmail.com.
BioGRID themed curation projects focus on specific biological processes with disease relevance. Core genes/proteins central to the process are assembled with expert input and relevant publications curated for biological interactions. All BioGRID Themed curation projects are updated monthly and the following is a listing of our current themed curation projects, and their statistics as of this update:
| Project | Proteins | Publications | Interactions | Chemical Interactions |
PTMs |
|---|---|---|---|---|---|
| COVID-19 Coronavirus | 110 | 314 | 22,244 | - | 50 |
| Ubiquitin-Proteasome System | 1,582 | 19,967 | 279,051 | 1,540 | 59,615 |
| Fanconi Anemia | 69 | 3,136 | 18,400 | 94 | 4,345 |
| Glioblastoma | 198 | 6,160 | 31,743 | 852 | 8,051 |
| Autophagy | 197 | 3,695 | 27,919 | 303 | 7,108 |
| Saccharomyces cerevisiae Kinome | 260 | 5,113 | 99,662 | - | 3,853 |
To view all BioGRID Themed Curation Projects, visit our project page. For more information on BioGRID curation of themed projects or if you're interested in contributing to a new or existing project, please contact us at biogridadmin@gmail.com.
