Related Resources
The Biological General Repository for Interaction Datasets (BioGRID) is an interaction, post-translational modification, and chemical association repository with data compiled through comprehensive curation efforts
CRISPR Screen data in BioGRID ORCS can be accessed via the BioGRID ORCS REST web service. Screens in various formats can be fetched from the BioGRID ORCS REST Service over HTTPS, programmatically or in a browser.
This BioGRID project page is designed to allow exploration of the entire yeast kinome and its interactions, including genetic interactions and all mapped sites of protein phosphorylation.
Latest News
The BioGRID's curated set of data have been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 71,178 publications. These additions bring our total number of non-redundant interactions to 1,361,694, raw interactions to 1,753,686, non-redundant chemical associations to 12,015, raw chemical associations to 28,093, Non-Redundant PTM Sites to 458,181, Raw PTM Sites to 817,400 and Un-Assigned PTMs to 57,396.
New curated data are added in curation updates on a monthly basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these data, visit our download page or utilize our web service.
The BioGRID's curated set of data have been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 70,958 publications. These additions bring our total number of non-redundant interactions to 1,355,957, raw interactions to 1,746,922, non-redundant chemical associations to 12,015, raw chemical associations to 28,093, Non-Redundant PTM Sites to 458,181, Raw PTM Sites to 817,400 and Un-Assigned PTMs to 57,396.
New curated data are added in curation updates on a monthly basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these data, visit our download page or utilize our web service.
BioGRID ORCS build 1.0.3 (our latest update) added nearly 400 new screens to our CRISPR database including 325 from our latest featured dataset, "Prioritization of cancer therapeutic targets using CRISPR-Cas9 screens." by Behan FM et al. (Nature, 2019). This comprehensive dataset is comprised of genome-scale CRISPR-Cas9 screens in 324 human cancer cell lines from 30 cancer types, and is developed to prioritize candidates for cancer therapeutics.
A special thanks to the authors Behan FM, Iorio F, Picco G, Gonçalves E, Beaver CM, Migliardi G, Santos R, Rao Y, Sassi F, Pinnelli M, Ansari R, Harper S, Jackson DA, McRae R, Pooley R, Wilkinson P, van der Meer D, Dow D, Buser-Doepner C, Bertotti A, Trusolino L, Stronach EA, Saez-Rodriguez J, Yusa K, and Garnett MJ and the Garnett Group, Yusa Group, Saez Lab, Heidelberg University, Open Targets, and the Wellcome Sanger Institute.
If you have a CRISPR Screen Dataset you'd like to deposit directly into the BioGRID ORCS CRISPR Database, please contact us at biogridadmin@gmail.com.
The BioGRID's curated set of data have been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 70,715 publications. These additions bring our total number of non-redundant interactions to 1,350,574, raw interactions to 1,740,143, non-redundant chemical associations to 12,015, raw chemical associations to 28,093, Non-Redundant PTM Sites to 458,181, Raw PTM Sites to 817,400 and Un-Assigned PTMs to 57,396.
New curated data are added in curation updates on a monthly basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these data, visit our download page or utilize our web service.
The BioGRID's curated set of data have been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 70,417 publications. These additions bring our total number of non-redundant interactions to 1,345,800, raw interactions to 1,732,644, non-redundant chemical associations to 12,015, raw chemical associations to 28,093, Non-Redundant PTM Sites to 458,181, Raw PTM Sites to 817,400 and Un-Assigned PTMs to 57,396.
New curated data are added in curation updates on a monthly basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these data, visit our download page or utilize our web service.
The BioGRID's curated set of data have been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 70,208 publications. These additions bring our total number of non-redundant interactions to 1,342,777, raw interactions to 1,728,498, non-redundant chemical associations to 12,015, raw chemical associations to 28,093, Non-Redundant PTM Sites to 367,288, Raw PTM Sites to 817,400 and Un-Assigned PTMs to 57,396.
New curated data are added in curation updates on a monthly basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these data, visit our download page or utilize our web service.
The BioGRID ORCS curated CRISPR database has been updated to include CRISPR screens from a total of 49 different publications. These additions bring our total number of curated CRISPR screens in our database to 895 encompassing 58,000+ genes, 629 different cell lines, and 111 different cell types across 3 different model organism species (Human, Mouse, and Fruit Fly).
New curated data are added to our CRISPR Database in curation updates on a regular basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these CRISPR data, visit our download page or utilize our web service.
The BioGRID's curated set of data have been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 69,922 publications. These additions bring our total number of non-redundant interactions to 1,322,353, raw interactions to 1,706,694, non-redundant chemical associations to 12,015, raw chemical associations to 28,093, Non-Redundant PTM Sites to 367,288, Raw PTM Sites to 668,982 and Un-Assigned PTMs to 57,396.
New curated data are added in curation updates on a monthly basis. For a more comprehensive breakdown of our numbers, check out our latest statistics. To download these data, visit our download page or utilize our web service.
BioGRID update 3.5.173 includes a comprehensive update to our Schizosaccharomyces pombe dataset in partnership with The Scientific Resource for Fission Yeast (PomBase). This update incorporates close to 3,000 new interactions. Moreover, this increases the total number of Schizosaccharomyces pombe interactions deposited in BioGRID to 75,229 from 2,600+ publications. These interactions and all associated meta data are available immediately online via all standard BioGRID searches and supported download formats. You can also find these and many additional fission yeast resources available at https://www.pombase.org.
A special thanks to the PomBase Team for their tireless curation efforts and in particular Antonia Lock, Kim Rutherford and Valerie Wood for directly helping to facilitate the BioGRID collaboration.
If you have an interaction dataset you'd like to deposit directly into the BioGRID, please contact us at biogridadmin@gmail.com.
